PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016458586.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 293aa    MW: 33240.6 Da    PI: 10.0195
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016458586.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.91.6e-17142232199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k +++s+v +  +l lp +f+e+h    ++++ + l de+g ++e  +   +k+ +  l++GW+ F+ +++L++gD +vF+l++ ++f  +v 
  XP_016458586.1 142 FIKSMVRSHVYSCFWLGLPTRFCEDHLP--KSTVNVLLVDEEGSEYEALF--IGKRTG--LSGGWRAFALDHKLDDGDALVFELVEATKF--KVY 228
                     89************************53..36789***************..555544..***********************9987777..888 PP

                     EE-S CS
              B3  96 vfrk 99 
                     ++r+
  XP_016458586.1 229 IVRT 232
                     8876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-21134234IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-24136236IPR015300DNA-binding pseudobarrel domain
CDDcd100178.99E-27140231No hitNo description
PfamPF023621.6E-15142231IPR003340B3 DNA binding domain
SMARTSM010191.2E-22142233IPR003340B3 DNA binding domain
PROSITE profilePS5086313.422142233IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MANENGTTSY EEVRRQRVLD NKKRFEDLGI LSISKNLSDL AKSEKKSDKK YEVTRVRQKA  60
NDVYMLEPRR SGRARNPVPS YRDDIDMELP SFRNRSRLSS SWASYLARPL EEVKMASCQA  120
RAQAIKSAEK LQSNLQSANP SFIKSMVRSH VYSCFWLGLP TRFCEDHLPK STVNVLLVDE  180
EGSEYEALFI GKRTGLSGGW RAFALDHKLD DGDALVFELV EATKFKVYIV RTSYCSSRED  240
KSGAEKGENE AEETSKSVTK KRKKSSKQSE VPTVAKEEIS VAASATRRST RRK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1259263KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016458586.10.0PREDICTED: putative B3 domain-containing protein At5g58280
RefseqXP_016458587.10.0PREDICTED: putative B3 domain-containing protein At5g58280
SwissprotQ9FHB21e-69Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBLA0A0V0HN401e-170A0A0V0HN40_SOLCH; Putative ovule protein (Fragment)
STRINGPGSC0003DMT4000531991e-170(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125102022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.13e-70B3 family protein